SNP Profiles matching MAN 15/2

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 Key

 1234567891011121314
_Input profile
CCAACGCCCTTTGTCTTTAAGGCTAACT
1._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAGGCTAACT
2._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAGGCTAACT
3._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAGGCTAACT
4._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAGGCTAACT
5._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
6._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
7._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
8._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
9._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
10._RUQ_87
_AACGCC__-____CTAA_
11._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
12._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
13._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
14._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
15._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
16._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
17._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
18._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
19._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
20._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
21._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
22._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
23._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
24._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
25._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
26._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
27._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
28._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
29._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
30._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
31._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
32._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
33._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
34._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
35._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
36._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
37._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
38._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAAGCTAACT
39._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAAGCTAA_
40._RUQ_86
CCAGCGCCCTTTGTCTTTAAAGCTAACT
41._RUQ_86
_AACGCC__-____CTAA_
 1516171819202122232425262728
_Input profile
AAGGCTCTGGGGAACCACCGGTCCACAG
1._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
2._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
3._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
4._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
5._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
6._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
7._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
8._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
9._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
10._RUQ_87
___TTGGGG_CCACCGGTCCACAG
11._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
12._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
13._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
14._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
15._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
16._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
17._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
18._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
19._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
20._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
21._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
22._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
23._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
24._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
25._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
26._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
27._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
28._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
29._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
30._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
31._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
32._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
33._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
34._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
35._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
36._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
37._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
38._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACGGGTCCACAG
39._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACGGGTCCACAG
40._RUQ_86
AAGGCTCTGGGGAACCACGGGTCCACAG
41._RUQ_86
___TTGGGG_CCACCGGTCCACAG
 2930313233343536373839   
_Input profile
GGAATTAACGAACCGTCCATGGX_XX_XX_X
1._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
2._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
3._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
4._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
5._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
6._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
7._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
8._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
9._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
10._RUQ_87
_AATTAACGACCCGTCC__X_XX_XX_X
11._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
12._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
13._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
14._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
15._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
16._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
17._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
18._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
19._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
20._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
21._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
22._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
23._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
24._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
25._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
26._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
27._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
28._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
29._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
30._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
31._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
32._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
33._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
34._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
35._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
36._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
37._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
38._MAN_15_/2_[BRA]
GGAATTAGCGACCTGTCCATGGX_XX_XX_X
39._MAN_15_/2_[BRA]
GGAATTAGCGACCTGTCCATGGX_XX_XX_X
40._RUQ_86
GGAATTAGCGACCTGTCCATGGX_XX_XX_X
41._RUQ_86
_AATTAGCGACCTGTCC__X_XX_XX_X

Input profile: MAN_15_/2_[BRA]

 
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Mars Center for Cocoa Science, Brazil
Location: 5223 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 5 > FP
 Dapeng Zhang, 2016

2._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 3 > FP
 Dapeng Zhang, 2016

3._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 2 > FP
 Dapeng Zhang, 2016

4._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 1 > FP
 Dapeng Zhang, 2016

5._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

8._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

10._MAN_15_/60_[BRA] RUQ_87

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

13._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

14._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

19._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

20._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

21._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

22._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

23._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

24._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

25._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

26._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

27._LP_1_/41_[POU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

29._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

30._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

31._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

34._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

35._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

36._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

37._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

38._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0297
 Dapeng Zhang, 2016

39._MAN_15_/2_[BRA]

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

40._MAN_15_/2_[BRA] RUQ_86

92.3 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

41._MAN_15_/2_[BRA] RUQ_86

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25